Alexey Fomenkov : rechercher sur Z-Library

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1

Targeting DNA 5mCpG sites with chimeric endonucleases

Alexey Fomenkov, Priscilla Hiu-Mei Too, Siu-Hong Chan, Romas Vaisvila, Beth Ann Cantin, Laurie Mazzola, Vernissia Tam, Shuang-yong Xu

Journal:

Analytical Biochemistry

Année:

2008

Langue:

english

Fichier:

PDF, 709 KB

english, 2008

2

Some aspects of polybenzimidazoles’ synthesis in P2O5 containing condensation media

Alexey Y. Leykin, Alexander I. Fomenkov, Elena G. Galpern, Ivan V. Stankevich, Alexander L. Rusanov

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 339 KB

english, 2010

3

p63-Specific Activation of the BPAG-1e Promoter

Osada, Motonobu, Nagakawa, Yuichi, Park, Hannah Lui, Yamashita, Keishi, Wu, Guojun, Kim, Myoung Sook, Fomenkov, Alexey, Trink, Barry, Sidransky, David

Journal:

The Journal of Investigative Dermatology

Année:

2005

Langue:

english

Fichier:

PDF, 698 KB

english, 2005

4

Corrigendum: CDC91L1 (PIG-U) is a newly discovered oncogene in human bladder cancer

Guo, Zhongmin, Linn, Jürgen F, Wu, Guojun, Anzick, Sarah L, Eisenberger, Claus F, Halachmi, Sarel, Cohen, Yoram, Fomenkov, Alexey, Hoque, Mohammad O, Okami, Kenji

Journal:

Nature Medicine

Année:

2004

Langue:

english

Fichier:

PDF, 47 KB

english, 2004

5

CDC91L1 (PIG-U) is a newly discovered oncogene in human bladder cancer

Guo, Zhongmin, Linn, Jürgen F., Wu, Guojun, Anzick, Sarah L, Eisenberger, Claus F, Halachmi, Sarel, Cohen, Yoram, Fomenkov, Alexey, Hoque, Mohammad Obaidul, Okami, Kenji

Journal:

Nature Medicine

Année:

2004

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2004

6

ΔNp63 induces β-catenin nuclear accumulation and signaling

Meera Patturajan, Shuji Nomoto, Matthias Sommer, Alexey Fomenkov, Kenji Hibi, Rachel Zangen, Nina Poliak, Joseph Califano, Barry Trink, Edward Ratovitski, David Sidransky

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 709 KB

english, 2002

7

Cloning of NruI and Sbo13I restriction and modification sstems inE. coliand amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases

Zhenyu Zhu, Chandra Sekhar Pedamallu, Alexey Fomenkov, Jack Benner, Shuang-yong Xu

Journal:

BMC Research Notes

Année:

2010

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2010

8

Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease

Alexey Fomenkov, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 717 KB

english, 1995

9

Nucleotide sequence of a small plasmid isolated from Acetobacter pasteurianus

Alexey Fomenkov, Jian-ping Xiao, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 147 KB

english, 1995

10

Cloning of a gene from Thermus filiformis and characterization of the thermostable nuclease

Alexey Fomenkov, Shuang-yong Xu

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 470 KB

english, 1995

11

The N-Terminal Domain of Escherichia coli Enzyme I of the Phosphoenolpyruvate/Glycose Phosphotransferase System: Molecular Cloning and Characterization

Françoise Chauvin, Alexey Fomenkov, Craig R. Johnson and Saul Roseman

Journal:

Proceedings of the National Academy of Sciences

Année:

1996

Langue:

english

Fichier:

PDF, 779 KB

english, 1996

12

In vivo and in vitro Complementation of the N-Terminal Domain of Enzyme I of the Escherichia coli Phosphotransferase System by the Cloned C-Terminal Domain

Alexey Fomenkov, Airat Valiakhmetov, Ludwig Brand and Saul Roseman

Journal:

Proceedings of the National Academy of Sciences

Année:

1998

Langue:

english

Fichier:

PDF, 1.19 MB

english, 1998

13

Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk

O’Connor, Roberta M., Fung, Jennifer M., Sharp, Koty H., Benner, Jack S., McClung, Colleen, Cushing, Shelley, Lamkin, Elizabeth R., Fomenkov, Alexey I., Henrissat, Bernard, Londer, Yuri Y., Scholz, Ma

Journal:

Proceedings of the National Academy of Sciences

Année:

2014

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2014

14

Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI

Horton, John R., Nugent, Rebecca L., Li, Andrew, Mabuchi, Megumu Yamada, Fomenkov, Alexey, Cohen-Karni, Devora, Griggs, Rose M., Zhang, Xing, Wilson, Geoffrey G., Zheng, Yu, Xu, Shuang-yong, Cheng, Xi

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2014

15

Biochemical characterization of a Naegleria TET-like oxygenase and its application in single molecule sequencing of 5-methylcytosine

Pais, June E., Dai, Nan, Tamanaha, Esta, Vaisvila, Romualdas, Fomenkov, Alexey I., Bitinaite, Jurate, Sun, Zhiyi, Guan, Shengxi, Corrêa, Ivan R., Noren, Christopher J., Cheng, Xiaodong, Roberts, Richa

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2015

16

The ‘endo-blue method’ for direct cloning of restriction endonuclease genes in E.coli

Fomenkov, Alexey, Xiao, Jian-ping, Dila, Deborah, Raleigh, Elisabeth, Xu, Shuang-yong

Journal:

Nucleic Acids Research

Année:

1994

Langue:

english

Fichier:

PDF, 1.72 MB

english, 1994

17

Complete Genome Sequence Analysis of Bacillus subtilis T30

Xu, Shuang-yong, Boitano, Matthew, Clark, Tyson A., Vincze, Tamas, Fomenkov, Alexey, Kumar, Sanjay, Too, Priscilla Hiu-Mei, Gonchar, Danila, Degtyarev, Sergey K., Roberts, Richard J.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 155 KB

english, 2015

18

Isolation and properties of a new site-specific endonuclease Bmel42I from Bacillus megaterium 142

Fomenkov, Alexey I., Kramarov, Vladimir, Andreev, Leonid V., Mochalov, Vladimir V., Smolyaninov, Vladimir V., Matvienko, Nicholas I.

Journal:

Nucleic Acids Research

Année:

1988

Langue:

english

Fichier:

PDF, 883 KB

english, 1988

19

RACK1 and Stratifin Target ΔNp63α for a Proteasome Degradation in Head and Neck Squamous Cell Carcinoma Cells upon DNA Damage

Fomenkov, Alexey, Zangen, Rachel, Huang, Yi-Ping, Osada, Motonobu, Guo, Zhongmin, Fomenkov, Tanya, Trink, Barry, Sidransky, David, Ratovitski, Edward A.

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2004

20

Complete Genome Sequence and Methylome Analysis of Bacillus Strain X1

Fomenkov, Alexey, Lunnen, Keith D., Zhu, Zhenyu, Anton, Brian P., Wilson, Geoffrey G., Vincze, Tamas, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 147 KB

english, 2015

21

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

Devora Cohen-Karni, Derrick Xu, Lynne Apone, Alexey Fomenkov, Zhiyi Sun, Paul J. Davis, Shannon R. Morey Kinney, Megumu Yamada-Mabuchi, Shuang-yong Xu, Theodore Davis, Sriharsa Pradhan, Richard J. Rob

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2011

22

Altered Sumoylation of p63α Contributes to the Split-Hand/Foot Malformation Phenotype

Huang, Yi-Ping, Wu, Guojun, Guo, Zhongmin, Osada, Motonobu, Fomenkov, Tanya, Park, Hannah Lui, Trink, Barry, Sidransky, David, Fomenkov, Alexey, Ratovitski, Edward A.

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 761 KB

english, 2004

23

AEC-Associated p63 Mutations Lead to Alternative Splicing/Protein Stabilization of p63 and Modulation of Notch Signaling

Huang, Yi-Ping, Kim, Yuriy, Li, Zhaobo, Fomenkov, Tanya, Fomenkov, Alexey, Ratovitski, Edward A.

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2005

24

Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents

Anton, Brian P., Fomenkov, Alexey, Raleigh, Elisabeth A., Berkmen, Mehmet

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 133 KB

english, 2016

25

Complete Genome Sequence of the Freshwater Colorless Sulfur Bacterium Beggiatoa leptomitiformis Neotype Strain D-402 T : TABLE 1

Fomenkov, Alexey, Vincze, Tamas, Grabovich, Margarita Y., Dubinina, Galina, Orlova, Maria, Belousova, Elena, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 155 KB

english, 2015

26

Complete Genome Sequence of a Strain of Azospirillum thiophilum Isolated from a Sulfide Spring: TABLE 1

Fomenkov, Alexey, Vincze, Tamas, Grabovich, Margarita, Anton, Brian P., Dubinina, Galina, Orlova, Maria, Belousova, Elena, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 141 KB

english, 2016

27

Complete Genome Sequence and Methylome Analysis of Acinetobacter calcoaceticus 65

Fomenkov, Alexey, Vincze, Tamas, Degtyarev, Sergey K., Roberts, Richard J.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 117 KB

english, 2017

28

Complete Genome and Methylome Analysis of Psychrotrophic Bacterial Isolates from Lake Untersee in Antarctica

Fomenkov, Alexey, Akimov, Vladimir N., Vasilyeva, Lina V., Andersen, Dale T., Vincze, Tamas, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 117 KB

english, 2017

29

Whole-Genome Sequence and Methylome Analysis of the Freshwater Colorless Sulfur Bacterium Thioflexothrix psekupsii D3

Fomenkov, Alexey, Vincze, Tamas, Grabovich, Margarita Y., Dubinina, Galina, Orlova, Maria, Belousova, Elena, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 122 KB

english, 2017

30

The non-specific adenine DNA methyltransferase M.EcoGII

Murray, Iain A, Morgan, Richard D, Luyten, Yvette, Fomenkov, Alexey, Corrêa, Ivan R., Dai, Nan, Allaw, Mohammed B, Zhang, Xing, Cheng, Xiaodong, Roberts, Richard J

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 2.34 MB

english, 2018

31

Exploring enhanced reactivity of nanosized titanium toward oxidation

Muravyev, Nikita V., Monogarov, Konstantin A., Zhigach, Alexey N., Kuskov, Mikhail L., Fomenkov, Igor V., Pivkina, Alla N.

Journal:

Combustion and Flame

Année:

2018

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2018

32

Complete Genome Sequence and Methylome Analysis of Bacillus caldolyticus NEB414

Fomenkov, Alexey, Vincze, Tamas, Mersha, Fana, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 117 KB

english, 2018

33

Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia

Johnston, Christopher D., Skeete, Chelsey A., Fomenkov, Alexey, Roberts, Richard J., Rittling, Susan R., Jeltsch, Albert

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.65 MB

english, 2017

34

Correction for Fomenkov et al., “Complete Genome Sequence of the Freshwater Colorless Sulfur Bacterium Beggiatoa leptomitoformis Neotype Strain D-402 T ”

Fomenkov, Alexey, Vincze, Tamas, Grabovich, Margarita Y., Dubinina, Galina, Orlova, Maria, Belousova, Elena, Roberts, Richard J.

Journal:

Genome Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 99 KB

english, 2018

35

Complete Genome Sequence and Methylome Analysis of Deinococcus wulumuqiensis 479

Fomenkov, Alexey, Luyten, Yvette, Vincze, Tamas, Anton, Brian P., Roberts, Richard J., Morgan, Richard D., Bruno, Vincent

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 120 KB

english, 2019

36

Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei

DasSarma, Shiladitya, Fomenkov, Alexey, DasSarma, Satyajit L., Vincze, Tamas, DasSarma, Priya, Roberts, Richard J., Stedman, Kenneth M.

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 141 KB

english, 2019

37

Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei

DasSarma, Shiladitya, Fomenkov, Alexey, DasSarma, Satyajit L., Vincze, Tamas, DasSarma, Priya, Roberts, Richard J., Stedman, Kenneth M.

Journal:

Microbiology Resource Announcements

Année:

2019

Fichier:

PDF, 141 KB

2019

38

Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris 2H

Mankai, Houda, Anton, Brian P., Wu, Victoria, Vincze, Tamas, Roberts, Richard J., Limam, Ferid, Fomenkov, Alexey, Bruno, Vincent

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 118 KB

english, 2019

39

A protein architecture guided screen for modification dependent restriction endonucleases

Lutz, Thomas, Flodman, Kiersten, Copelas, Alyssa, Czapinska, Honorata, Mabuchi, Megumu, Fomenkov, Alexey, He, Xinyi, Bochtler, Matthias, Xu, Shuang-yong

Journal:

Nucleic Acids Research

Année:

2019

Langue:

english

Fichier:

PDF, 5.17 MB

english, 2019

40

A protein architecture guided screen for modification dependent restriction endonucleases

Lutz, Thomas, Flodman, Kiersten, Copelas, Alyssa, Czapinska, Honorata, Mabuchi, Megumu, Fomenkov, Alexey, He, Xinyi, Bochtler, Matthias, Xu, Shuang-yong

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 5.17 MB

2019

41

Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å

Horton, John R, Yang, Jie, Zhang, Xing, Petronzio, Theresa, Fomenkov, Alexey, Wilson, Geoffrey G, Roberts, Richard J, Cheng, Xiaodong

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 6.67 MB

2019

42

Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease

Stenmark, Bianca, Harrison, Odile B., Eriksson, Lorraine, Anton, Brian P., Fomenkov, Alexey, Roberts, Richard J., Tooming-Klunderud, Ave, Bratcher, Holly B., Bray, James E., Thulin-Hedberg, Sara, Maid

Journal:

Scientific Reports

Année:

2020

Langue:

english

Fichier:

PDF, 2.99 MB

english, 2020

43

Protein Domain Guided Screen for Sequence Specific and Phosphorothioate-Dependent Restriction Endonucleases

Lutz, Thomas, Czapinska, Honorata, Fomenkov, Alexey, Potapov, Vladimir, Heiter, Daniel F., Cao, Bo, Dedon, Peter, Bochtler, Matthias, Xu, Shuang-yong

Journal:

Frontiers in Microbiology

Année:

2020

Fichier:

PDF, 2.93 MB

2020

44

Plasmid replication-associated single-strand-specific methyltransferases

Fomenkov, Alexey, Sun, Zhiyi, Murray, Iain A, Ruse, Cristian, McClung, Colleen, Yamaichi, Yoshiharu, Raleigh, Elisabeth A, Roberts, Richard J

Journal:

Nucleic Acids Research

Année:

2020

Fichier:

PDF, 4.43 MB

2020

45

Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis

Ben-Assa, Nadav, Coyne, Michael J, Fomenkov, Alexey, Livny, Jonathan, Robins, WilliamÂ P, Muniesa, Maite, Carey, Vincent, Carasso, Shaqed, Gefen, Tal, Jofre, Juan, Roberts, Richard J, Comstock, Laurie

Journal:

Nucleic Acids Research

Année:

2020

Fichier:

PDF, 3.71 MB

2020